PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g026690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 259aa    MW: 29512.4 Da    PI: 9.5424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g026690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15125214198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   ++ lp +f+++h+ k  ++ ++tl de+ +++  k+   k++    l++GW++F  +++L +gD vvF+l+  + f  +v 
  Csa19g026690.1 125 FVKPMLQSHVTGGFWMGLPLRFCKTHMPK--RDEMMTLVDEEDEEFVAKYLAAKTG----LSGGWRGFSIDHQLVDGDAVVFHLIAPTIF--KVY 211
                     89************************844..6679***************555555....***********************9986766..777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  Csa19g026690.1 212 IIR 214
                     666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-19116215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-24118216IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-24123214No hitNo description
PROSITE profilePS5086310.898125216IPR003340B3 DNA binding domain
PfamPF023621.2E-13125214IPR003340B3 DNA binding domain
SMARTSM010193.1E-20125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVESELSYEQ IRLNRVEENK KRMGELNLNK LAQSLRVSSS SKPSPSKTRT MRTPVDFLEI  60
RRSSRAKGPP PSYKEFGLEP LKRPRRSCQR RDLLNRVYAS DEARMYGIDR AETLQSSLDP  120
DFPSFVKPML QSHVTGGFWM GLPLRFCKTH MPKRDEMMTL VDEEDEEFVA KYLAAKTGLS  180
GGWRGFSIDH QLVDGDAVVF HLIAPTIFKV YIIRVNDDGN NDSDEENDIE SNKKQEENVS  240
EARPLRSSGK RKRGAGRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936210.0AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBankDQ4875610.0DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487845.10.0PREDICTED: B3 domain-containing protein At3g19184-like isoform X2
SwissprotQ1G3M31e-140Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLR0I0401e-155R0I040_9BRAS; Uncharacterized protein
STRINGAT3G19184.11e-138(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-119B3 family protein